Cheklovchi fermentlarni kesish joylari ro'yxati: Ba – Bc - List of restriction enzyme cutting sites: Ba–Bc

Asosiy maqolalar: Cheklov fermentlarini kesish joylari ro'yxati va Cheklov fermenti
Afsonasi nukleobazalar
KodNukleotid vakili
AAdenin (A)
CSitozin (C)
GGuanin (G)
TTimin (T)
NA, C, G yoki T
MA yoki C
RA yoki G
VA yoki T
YC yoki T
SC yoki G
KG yoki T
HA, C yoki T
BC, G yoki T
VA, C yoki G
D.A, G yoki T


Ushbu maqolada eng ko'p o'rganilgan cheklash fermentlari ro'yxati keltirilgan, ularning nomlari Ba dan Bc gacha bo'lgan bilan boshlanadi. Uning tarkibida taxminan 120 ta ferment mavjud.

Quyidagi ma'lumotlar berilgan:

  • Ferment: Qabul qilingan nomi molekula, xalqaro miqyosda qabul qilingan nomenklatura[1][2]va bibliografik ma'lumotnomalar. (Qo'shimcha o'qish: "bo'limiga qarang"Nomenklatura "maqolada"Cheklov fermenti ".)
  • PDB kodi: Tarkibidagi oqsil tuzilishini aniqlash uchun ishlatiladigan kod PDB oqsil tuzilmalari ma'lumotlar bazasi. Proteinning 3D atom tuzilishi uning ta'sir mexanizmining samimiy tafsilotlarini tushunish uchun juda qimmatli ma'lumotlarni beradi[3][4].
  • Manba: Fermentni tabiiy ravishda ishlab chiqaradigan organizm.
  • Tanib olish ketma-ketligi: Ferment tomonidan tan olingan va u maxsus bog'langan DNKning ketma-ketligi.
  • Kesilgan: Kesish joyi va kesmaning DNK mahsulotlari. The tanib olish ketma-ketligi va chiqib ketish joyi odatda mos keladi, lekin ba'zida chiqib ketish joyi tanib olish joyidan o'nlab nukleotidlar bo'lishi mumkin[5][6].
  • Izosizomerlar va neosizizomerlar: An izosizomer bu ferment bir xil ketma-ketlikni boshqasi bilan taniydi. A neosizomer izosizomerning boshqa turi bilan bir xil ketma-ketlikni tan oladigan, ammo boshqacha tarzda kesadigan maxsus turi. Har bir ferment uchun maksimal 8-10 ta eng keng tarqalgan izosizomerlar soni ko'rsatiladi, ammo ularning ko'plari bo'lishi mumkin. Neosizomerlar qalin va yashil rang shriftida ko'rsatilgan (masalan: BamHI). Qachon "Yo'q sana"ko'rsatilgan, ya'ni aniq belgilangan joy bilan ma'lumotlar bazalarida ro'yxatdan o'tgan izosizizomerlar mavjud emasligini anglatadi. Oq shrift va kulrang fon bilan ko'rsatilgan izosizizomerlar mavjud ro'yxatlarga kiritilmagan fermentlarga mos keladi:
ushbu ro'yxatdagi fermentda bo'lgani kabi: EcoR70I 


To'liq ro'yxat navigatsiyasi

Cheklov fermentlari

Ba - mil

FermentPDB kodiManbaTanib olish ketma-ketligiKesilganIzosizomerlar
Bac36IBacillus alcalophilus 36 5 'GGNCC
3 'CCNGG 		5 '--- G   GNCC --- 3 '
3 '--- CCNG   G --- 5 ' 		AspS9I, AvcI, BavAII, Bce22I, Bsp1894I, Bsu54I, FmuI, NspIV
BaeI [7]Bacillus sphaericus 5 'ACN4GTAYC
3 'TGN4CATYG 		5 '--- ACN4GTAYCN6NNNNNN   --- 3'
3 '--- TGN4CATYGN6N   NNNNN --- 5 ' 		 - 2010 yil may oyida yo'q -
BalI [8][9]Brevibacterium albidum 5 'TGGCCA
3 'ACCGGT 		5 '--- TGG   CCA --- 3 '
3 '--- ACC   GGT --- 5 '
Bal228IBacillus alcalophilus 228 5 'GGNCC
3 'CCNGG 		5 '--- G   GNCC --- 3 '
3 '--- CCNG   G --- 5 ' 		AspS9I, AvcI, BavAII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
BamHI [10][11][12][13][14][15][16][17][18][19][20]

[21][22][23][24][25][26][27][28][29][30]		1BAMBacillus amyloliquefaciens H 5 'GGATCC
3 'CCTAGG 		5 '--- G   GATCC --- 3 '
3 '--- CCTAG   G --- 5 ' 		AccEBI, AliI, ApaCI, AsiI, Bce751I, Bsp98I, Bsp4009I, BspAAIII, CelI, Nsp29132II, NspSAIV, SolI, SurI
BamNIIBacillus amyloliquefaciens N 5 'GGWCC
3 'CCWGG 		5 '--- G   GWCC --- 3 '
3 '--- CCWG   G --- 5 ' 		BcuAI, BsrAI, CauI, EagMI, FdiI, HgiCII, HgiJI, SinI
BanI [31][32]Bacillus aneurinolyticus 5 'GGYRCC
3 'CCRYGG 		5 '--- G   GYRCC --- 3 '
3 '--- CCRYG   G --- 5 ' 		AccB1I, BbvBI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
BanII [12][31]Bacillus aneurinolyticus 5 'GRGCYC
3 'CYCGRG 		5 '--- GRGCY   C --- 3 '
3 '--- C   YCGRG --- 5 '
Ban III [31]Bacillus aneurinolyticus 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		AagI, BavCI, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
BanAIBacillus antrasis 5 'GGCC
3 'CCGG 		5 '--- GG   CC --- 3 '
3 '--- CC   GG --- 5 '
BasIBacillus sp. 5 'CCAN5TGG
3 'GGTN5ACC 		5 '--- CCANNNN   NTGG --- 3 '
3 '--- GGTN   NNNNACC --- 5 ' 		AccB7I, AcpII, Asp10HII, Esp1396I, PflBI, PflMI, Van91I
YaxshiBacillus aquaemaris RFL1 5 'CACGAG
3 'GTGCTC 		5 '--- C   ACGAG --- 3 '
3 '--- GTGCT   C --- 5 '
BavIBacillus alvei 5 'CAGCTG
3 'GTCGAC 		5 '--- CAG   CTG --- 3 '
3 '--- GTC   GAC --- 5 '
BavAIBacillus alvei A 5 'CAGCTG
3 'GTCGAC 		5 '--- CAG   CTG --- 3 '
3 '--- GTC   GAC --- 5 '
BavAIIBacillus alvei A 5 'GGNCC
3 'CCNGG 		5 '--- G   GNCC --- 3 '
3 '--- CCNG   G --- 5 ' 		AspS9I, AvcI, BavBII, BshKI, Bsp1894I, Bsu54I, FmuI, NspIV
BavBIBacillus alvei B 5 'CAGCTG
3 'GTCGAC 		5 '--- CAG   CTG --- 3 '
3 '--- GTC   GAC --- 5 '
BavBIIBacillus alvei B 5 'GGNCC
3 'CCNGG 		5 '--- G   GNCC --- 3 '
3 '--- CCNG   G --- 5 ' 		AspS9I, Bac36I, BavAII, BshKI, BspBII, Bsu54I, FmuI, Pde12I
BavCIBacillus alvei C 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		AagI, BanIII, Bsa29I, BseCI, BspDI, Bsu15I, BsuTUI, ClaI
Yaxshi [33]Bifidobakterium breve YIT4006 5 'GGCGCC
3 'CCGCGG 		5 '--- GGCGC   C --- 3 '
3 '--- C   CGCGG --- 5 '
BbiIIBifidobakterium bifidum YIT4007 5 'GRCGYC
3 'CYGCRG 		5 '--- GR   CGYC --- 3 '
3 '--- CYGC   RG --- 5 ' 		AcyI, AhaII, BbiII, HgiHII, Hin1I, Hsp92I, Msp17I, PamII
Bbi24IBifidobakterium bifidum S-24 5 'ACGCGT
3 'TGCGCA 		5 '--- A   CGCGT --- 3 '
3 '--- TGCGC   A --- 5 '
BbrIBordetella bronxiseptica 4994 5 'AAGCTT
3 'TTCGAA 		5 '--- A   AGCTT --- 3 '
3 '--- TTCGA   A --- 5 '
Bbr7IBacillus brevis 7 5 'GAAGAC
3 'CTTCTG 		5 '--- GAAGACN6N   NNNNN --- 3 '
3 '--- CTTCTGN6NNNNNN   --- 5'
BbrPI [34][35]Bacillus brevis 5 'CACGTG
3 'GTGCAC 		5 '--- CAC   GTG --- 3 '
3 '--- GTG   CAC --- 5 ' 		AcvI, BcoAI, Eco72I, PmaCI, PmlI, PspCI
BbsI [36]Bacillus laterosporus 5 'GAAGAC
3 'CTTCTG 		5 '--- GAAGACNN   NNNN --- 3 '
3 '--- CTTCTGNNNNNN   --- 5'
Bbu [37]Bacillus circulans 5 'GCATGC
3 'CGTACG 		5 '--- GCATG   C --- 3 '
3 '--- C   GTACG --- 5 '
BbvI [38][39]Bacillus brevis 5 'GCAGC
3 'CGTCG 		5 '--- GCAGCN7N   NNNN --- 3 '
3 '--- CGTCGN7NNNNN   --- 5' 		AlwXI, BseKI, BseXI, Bsp423I, Bst12I, Bst71I, BstV1I
BvvII [40]Bacillus brevis 80 5 'GAAGAC
3 'CTTCTG 		5 '--- GAAGACNN   NNNN --- 3 '
3 '--- CTTCTGNNNNNN   --- 5'
Bvv12I [41]Bacillus brevis 12 5 'GWGCWC
3 'CWCGWG 		5 '--- GWGCW   C --- 3 '
3 '--- C   WCGWG --- 5 '
Alw21I, AspHI, Bsh45I, BsiHKAI,
HgiAI, HpyF46II, MspV281I
Bbv16IIBacillus brevis 16 5 'GAAGAC
3 'CTTCTG 		5 '--- GAAGACNN   NNNN --- 3 '
3 '--- CTTCTGNNNNNN   --- 5'
BbvAIBacillus brevis A 5 'GAAN4TTC
3 'CTTN4AAG 		5 '--- GANN   NNTTC --- 3 '
3 '--- CTTNN   NNAAG --- 5 ' 		Asp700I, MroXI, PdmI, XmnI
BbvAIIBacillus brevis A 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		BavCI, Bci29I, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BbvAIIIBacillus brevis A 5 'TCCGGA
3 'AGGCCT 		5 '--- T   CCGGA --- 3 '
3 '--- AGGCC   T --- 5 ' 		AccIII, Aor13HI, BlfI, BseAI, Bsp13I, BspEI, Bsu23I, Kpn2I
BbvBIBacillus brevis B 5 'GGYRCC
3 'CCRYGG 		5 '--- G   GYRCC --- 3 '
3 '--- CCRYG   G --- 5 ' 		BanI, BshNI, BspT107I, Eco64I, HgiCI, HgiHI, MspB4I, PfaAI
BbvCI [42]Bacillus brevis 5 'CCTCAGC
3 'GGAGTCG 		5 '--- CC   TCAGC --- 3 '
3 '--- GGAGT   CG --- 5 ' 		AbeI
Bca77IBacillus caldolyticus 5 'WCCGGW
3 'WGGCCW 		5 '--- V   CCGGW --- 3 '
3 '--- WGGCC   V --- 5 '
Yashirin nusxaBacteroides caccae 5 'CCATC
3 'GGTAG 		5 '--- CCATCNNNN   N --- 3 '
3 '--- GGTAGNNNNN   --- 5'
Bce4IBacillus cereus B4 5 'GCN7GC
3 'CGN7CG 		5 '--- GCNNNNN   NNGC --- 3 '
3 '--- CGNN   NNNNNCG --- 5 '
Bce22IBacillus cereus 22 5 'GGNCC
3 'CCNGG 		5 '--- G   GNCC --- 3 '
3 '--- CCNG   G --- 5 ' 		AspS9I, Bac36I, BavAII, BshKI, BspBII, CcuI, FmuI, Pde12I
Bce83I [43]Bacillus cereus 83 5 'CTTGAG
3 'GAACTC 		5 '--- CTTGAGN13NNN   --- 3'
3 '--- GAACTCN13N   NN --- 5 '
Bce243IBacillus cereus 5 'GATC
3 'CTAG 		5' ---   GATC --- 3 '
3 '--- CTAG   --- 5' 		Bfi57I, Bsp143I, BspJI, BstMBI, CviAI, Kzo9I, NdeII, Sth368I
Bce751IBacillus cereus 751 5 'GGATCC
3 'CCTAGG 		5 '--- G   GATCC --- 3 '
3 '--- CCTAG   G --- 5 ' 		BamHI, Bce751I, BnaI, Bsp98I, Bsp4009I, BstI, NspSAIV, Pfl8I
BceAIBacillus cereus 1315 5 'ACGGC
3 'TGCCG 		5 '--- ACGGCN11N   NN --- 3 '
3 '--- TGCCGN11NNN   --- 5'
BceBIBacillus cereus 1323 5 'CGCG
3 'GCGC 		5 '--- CG   CG --- 3 '
3 '--- GC   GC --- 5 ' 		AccII, Bsh1236I, BtkI, Csp68KVI, FalII, FauBII, FnuDII, SelI, Tay
BceCIBacillus cereus 1195 5 'GCN7GC
3 'CGN7CG 		5 '--- GCNNNNN   NNGC --- 3 '
3 '--- CGNN   NNNNNCG --- 5 '
BcefI [44]Bacillus cereus fluorescens 5 'ACGGC
3 'TGCCG 		5 '--- ACGGCN10NN   N --- 3 '
3 '--- TGCCGN10NNN   --- 5'
BcgI [45][46]Bacillus koagulani 5 'CGAN6TGC
3 'GCTN6ACG 		5 '--- CGAN6TGCN9NNN   --- 3'
3 '--- GCTN6ACGN9N   NN --- 5 '
Bci29IBacillus circulans 29 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		BavCI, BciBI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BciBIBacillus circulans B 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		BavCI, BcmI, Bli86I, BseCI, BspZEI, Bsu15I, ClaI, Rme21I
BciBIIBacillus circulans B 5 'CCWGG
3 'GGWCC 		5 '--- CC   WGG --- 3 '
3 '--- GGW   CC --- 5 ' 		AjnI, ApyI, BptI, Bst1I, BstOI, BstM6I, Bst2UI, EcoRII, MvaI
BciVI [47]Bacillus circulans 5 'GTATCC
3 'CATAGG 		5 '--- GTATCCN4NN   --- 3'
3 '--- CATAGGN4N   N --- 5 ' 		BfuI
BclI [15][48][49]Bacillus caldolyticus 5 'TGATCA
3 'ACTAGT 		5 '--- T   GATCA --- 3 '
3 '--- ACTAG   T --- 5 '
AbaI, BsiQI, BspXII,
BstT7I, FbaI, Ksp22I, ParI 
BcmIBacillus sp. 5 'ATCGAT
3 'TAGCTA 		5 '--- AT   CGAT --- 3 '
3 '--- TAGC   TA --- 5 ' 		BsuTUI, Bsu15I, BavCI, Bli86I, BspZEI, Rme21I, BseCI, BdiI
BcnI [50][51][52]2ODHBacillus centrosporus RFL1 5 'CCSGG
3 'GGSCC 		5 '--- CC   SGG --- 3 '
3 '--- GGS   CC --- 5 '
AhaI, AseII, AsuC2I,BpuMI,CauII,
Eko1831I, HgiS22I,Kpn49kII, NciI
BcoI [53]Bacillus koagulani SM 1 5 'CYCGRG
3 'GRGCYC 		5 '--- C   YCGRG --- 3 '
3 '--- GRGCY   C --- 5 ' 		Ama87I, AquI, BsoBI, BstSI, Eco88I, NspSAI, OfoI, PunAI
Bco5IBacillus koagulani 5 5 'CTCTTC
3 'GAGAAG 		5 '--- CTCTTCN   NNN --- 3 '
3 '--- GAGAAGNNNN   --- 5'
Bco27IBacillus koagulani 27 5 'CCGG
3 'GGCC 		5 '--- C   CGG --- 3 '
3 '--- GGC   C --- 5 '
Bco116IBacillus koagulani 116 5 'CTCTTC
3 'GAGAAG 		5 '--- CTCTTCN   NNN --- 3 '
3 '--- GAGAAGNNNN   --- 5'
Bco118IBacillus koagulani 118 5 'RCCGGY
3 'YGGCCR 		5 '--- R   CCGGY --- 3 '
3 '--- YGGCC   R --- 5 '
BcoAIBacillus koagulani AUCM B-732 5 'CACGTG
3 'GTGCAC 		5 '--- CAC   GTG --- 3 '
3 '--- GTG   CAC --- 5 ' 		AcvI, BbrPI, Eco72I, PmaCI, PmlI, PspCI
BcoKIBacillus koagulani 5 'CTCTTC
3 'GAGAAG 		5 '--- CTCTTCN   NNN --- 3 '
3 '--- GAGAAGNNNN   --- 5'
BcuIBacillus koagulani Vs 29-022 5 'ACTAGT
3 'TGATCA 		5 '--- A   CTAGT --- 3 '
3 '--- TGATC   A --- 5 ' 		AhII, AclNI, SpeI
BcuAIBacillus cereus BKM B-814 5 'GGWCC
3 'CCWGG 		5 '--- G   GWCC --- 3 '
3 '--- CCWG   G --- 5 ' 		BamNxI, BsrAI, Csp68KI, EagMI, FssI, HgiCII, HgiJI, SinI
Ushbu ro'yxat to'liqsiz; yordam berishingiz mumkin etishmayotgan narsalarni qo'shish bilan ishonchli manbalar.

Izohlar

  1. ^ Smit XO, Natans D (1973 yil dekabr). "Maktub: bakterial xostlarni modifikatsiya qilish va cheklash tizimlari va ularning fermentlari uchun tavsiya etilgan nomenklatura". J. Mol. Biol. 81 (3): 419–23. doi:10.1016/0022-2836(73)90152-6. PMID  4588280.
  2. ^ Roberts RJ, Belfort M, Bestor T, Bhagvat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP , Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, S yo'q, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowic A, Pingoud A, Raleigh. E, Rao DN, Reyx N, Repin VE, Selker Evropa Ittifoqi, Shou Kompyuter, Stein DC, Stoddard BL, Szybalski V, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY (aprel 2003). "Restrikt fermentlari, DNK metiltransferazalar, homing endonukleazalar va ularning genlari uchun nomenklatura". Nuklein kislotalari rez. 31 (7): 1805–12. doi:10.1093 / nar / gkg274. PMC  152790. PMID  12654995.
  3. ^ Jeremy MB, John LT, Lyubert S (2002). "3. Proteinlarning tuzilishi va funktsiyasi". Biokimyo. San-Frantsisko: W. H. Freeman. ISBN  0-7167-4684-0.
  4. ^ Anfinsen CB (1973). "Protein zanjirlarini katlamasini boshqaruvchi tamoyillar". Ilm-fan. 181 (4096): 223–30. doi:10.1126 / science.181.4096.223. PMID  4124164.
  5. ^ Kessler S, Manta V (1990 yil avgust). "Cheklash endonukleazalari va DNK modifikatsiyasining metiltransferazlarning o'ziga xos xususiyati (3-nashr)". Gen. 92 (1–2): 1–248. doi:10.1016 / 0378-1119 (90) 90486-B. PMID  2172084.
  6. ^ Pingoud A, Jeltsch A (sentyabr 2001). "II tipli restriksiyonli endonukleazalarning tuzilishi va funktsiyasi". Nuklein kislotalari rez. 29 (18): 3705–27. doi:10.1093 / nar / 29.18.3705. PMC  55916. PMID  11557805.
  7. ^ Sears LE, Zhou B, Aliotta JM, Morgan RD, Kong H (sentyabr 1996). "BaeI, yana bir noodatiy BcgI o'xshash cheklash endonuklezi". Nuklein kislotalari rez. 24 (18): 3590–2. doi:10.1093 / nar / 24.18.3590. PMC  146138. PMID  8836187.
  8. ^ Ueno X, Kato I, Ishino Y (iyun 1996). "BalI cheklash-modifikatsiya tizimini klonlash va ifodalash". Nuklein kislotalari rez. 24 (12): 2268–70. doi:10.1093 / nar / 24.12.2268. PMC  145948. PMID  8710495.
  9. ^ Gelinas RE, Myers PA, Vayss GH, Roberts RJ, Murray K (avgust 1977). "Maxsus endonukleaza Brevibacterium albidum". J Mol Biol. 114 (3): 433–40. doi:10.1016/0022-2836(77)90260-1. PMID  909093.
  10. ^ Vey H, Terrien S, Blanchard A, Guan S, Zhu Z (may 2008). "Fidelity Index DNK-restriksiyali endonukleazalarning yulduz faolligining sistematik miqdorini ta'minlaydi". Nuklein kislotalari rez. 36 (9): e50. doi:10.1093 / nar / gkn182. PMC  2396408. PMID  18413342.
  11. ^ Nishigaki K, Kaneko Y, Vakuda H, Husimi Y, Tanaka T (avgust 1985). "II turdagi cheklash endonukleazalari, umuman, bir zanjirli DNKlarni ajratib turadi". Nuklein kislotalari rez. 13 (16): 5747–60. doi:10.1093 / nar / 13.16.5747. PMC  321909. PMID  2994012.
  12. ^ a b Nelson M, Xrist S, Shildkraut I (1984 yil iyul). "DNK metilazalari tomonidan aniq endonukleaza tanib olish xususiyatlarining o'zgarishi". Nuklein kislotalari rez. 12 (13): 5165–73. doi:10.1093 / nar / 12.13.5165. PMC  318911. PMID  6087274.
  13. ^ Nelson PS, Papas TS, Schweinfest CW (1993 yil fevral). "5-metil-deoksitsitozin gemimetillangan DNKning endonukleaza ajratilishini yuqori fermentlar-substrat nisbatlarida cheklash". Nuklein kislotalari rez. 21 (3): 681–6. doi:10.1093 / nar / 21.3.681. PMC  309169. PMID  8441677.
  14. ^ Greene PJ, Heyneker HL, Bolivar F, Rodriguez RL, Betlach MC, Covarrubias AA, Backman K, Russel DJ, Tait R, Boyer HW (iyul 1978). "Restrikt fermentlarini tozalashning umumiy usuli". Nuklein kislotalari rez. 5 (7): 2373–80. doi:10.1093 / nar / 5.7.2373. PMC  342170. PMID  673857.
  15. ^ a b Xuang LH, Farnet CM, Erlich KC, Erlich M (mart 1982). "Yuqori modifikatsiyalangan bakteriofagli DNKning endonukleazalarni restriksion yordamida hazm qilish". Nuklein kislotalari rez. 10 (5): 1579–91. doi:10.1093 / nar / 10.5.1579. PMC  320551. PMID  6280151.
  16. ^ Wilson GA, Young FE (1975 yil sentyabr). "Ketma-ketlikka xos bo'lgan endonukleazani (BamI) ajratish Bacillus amyloliquefaciens H ". J Mol Biol. 97 (1): 123–5. doi:10.1016 / S0022-2836 (75) 80028-3. PMID  1177312.
  17. ^ Roberts RJ, Uilson GA, Young FE (yanvar 1977). "BamH.I dan o'ziga xos endonukleazani tanib olish ketma-ketligi Bacillus amyloliquefaciens H ". Tabiat. 265 (5589): 82–4. Bibcode:1977 yil natur.265 ... 82R. doi:10.1038 / 265082a0. PMID  834250.
  18. ^ Bruks JE, Benner JS, Heiter DF, Silber KR, Sznyter LA, Jager-Quinton T, Moran LS, Slatko BE, Wilson GG, Nwankwo DO (fevral 1989). "BamHI cheklovlarini o'zgartirish tizimini klonlash". Nuklein kislotalari rez. 17 (3): 979–97. doi:10.1093 / nar / 17.3.979. PMC  331717. PMID  2537955.
  19. ^ Viadiu H, Aggarval AK (may 2000). "BamHI ning o'ziga xos bo'lmagan DNK bilan bog'langan tuzilishi: DNK siljishi uchun model". Mol. Hujayra. 5 (5): 889–95. doi:10.1016 / S1097-2765 (00) 80329-9. PMID  10882125.
  20. ^ Jorj J, Chirikjian JG (1982 yil aprel). "BamHI ketma-ketligiga xos endonukleaza: ketma-ketlikni tanib olishni yumshatish". Proc Natl Acad Sci AQSh. 79 (8): 2432–6. Bibcode:1982PNAS ... 79.2432G. doi:10.1073 / pnas.79.8.2432. PMC  346212. PMID  6283522.
  21. ^ Mukhopadhyay P, Roy KB (1984). "Tartibga xos BamHI metilazasi. Tozalash va tavsiflash". Biologik kimyo jurnali. 259 (16): 10357–62. PMID  6469968.
  22. ^ Robinzon CR, Sligar SG (1995 yil aprel). "Cheklash endonukleazalari bilan molekulyar tanib olishda bir xillik: BamHI, Pvu II va EcoRV o'ziga xosligiga ozmotik va gidrostatik bosim ta'siri". Proc Natl Acad Sci AQSh. 92 (8): 3444–8. Bibcode:1995 yil PNAS ... 92.3444R. doi:10.1073 / pnas.92.8.3444. PMC  42183. PMID  7724581.
  23. ^ Viadiu H, Aggarval AK (oktyabr 1998). "BamHI cheklash endonukleazasi bilan katalizdagi metallarning roli". Nat Struct Biol. 5 (10): 910–6. doi:10.1038/2352. PMID  9783752.
  24. ^ Nyuman M, Strzelecka T, Dorner LF, Shildkraut I, Aggarval AK (avgust 1995). "DNK bilan bog'langan Bam HI endonukleazasining tuzilishi: DNKning bog'lanishida qisman katlama va katlama". Ilm-fan. 269 (5224): 656–63. Bibcode:1995 yil ... 269..656N. doi:10.1126 / science.7624794. PMID  7624794.
  25. ^ Roy KB, Vrushank D (1995 yil iyul). "Bam HI o'zini o'zi to'ldiruvchi d-CGCGGAGCCGCG dekoderini ikkala G dan oldin ajratadi va ehtimol DNKning katta yivida bog'lanadi". Biokimyo Mol Biol Int. 36 (4): 759–70. PMID  8528138.
  26. ^ Nyuman M, Strzelecka T, Dorner LF, Shildkraut I, Aggarval AK (may 1994). "Bamhi cheklashning cheklanishi 1.95 da bosqichma-bosqich bajarilib, MAD tahlillari asosida aniqlandi". Tuzilishi. 2 (5): 439–52. doi:10.1016 / S0969-2126 (00) 00045-9. PMID  8081758.
  27. ^ Nyuman M, Strzelecka T, Dorner LF, Shildkraut I, Aggarval AK (aprel 1994). "BamHI cheklash endonukleazasining tuzilishi va uning EcoRI bilan aloqasi". Tabiat. 368 (6472): 660–4. Bibcode:1994 yil natur.368..660N. doi:10.1038 / 368660a0. PMID  8145855.
  28. ^ Roy KB, Vrushank D, Jayaram B (1994 yil iyul). "BamHI cheklash endonukleazasi uchun Km va Kcat kinetik konstantalarini aniqlashda izotop-suyultirish hodisasidan foydalanish: empirik va iterativ yondashuv". Anal biokimyo. 220 (1): 160–4. doi:10.1006 / abio.1994.1313. PMID  7978240.
  29. ^ Bruks JE, Natan PD, Landri D, Sznyter LA, Waite-Rees P, Ives CL, Moran LS, Slatko BE, Benner JS (fevral, 1991). "Klonlangan BamHI cheklash modifikatsiyasi tizimining xarakteristikasi: uning nukleotidlar ketma-ketligi, metilaza xususiyatlari va geterologik xostlarda ifoda etilishi". Nuklein kislotalari rez. 19 (4): 841–50. doi:10.1093 / nar / 19.4.841. PMC  333720. PMID  1901989.
  30. ^ Mukhopadhyay P, Roy KB (1998 yil oktyabr). "BamHI cheklash endonukleazasining oqsilli muhandisligi: Ala bilan Cys54 o'rnini bosishi katalitik faollikni oshiradi". Protein Eng. 11 (10): 931–5. doi:10.1093 / protein / 11.10.931. PMID  9862213.
  31. ^ a b v Sugisaki H, Maekava Y, Kanazava S, Takanami M (oktyabr 1982). "Acetobacter aceti va Bacillus aneurinolyticus dan yangi cheklovchi endonukleazlar". Nuklein kislotalari rez. 10 (19): 5747–52. doi:10.1093 / nar / 10.19.5747. PMC  320926. PMID  6292849.
  32. ^ Schildkraut I, Lynch J, Morgan R (1987 yil iyul). "BanI va HgiC I endonukleazalarini taqiqlash uchun bo'linish joyi 5 '... G kamayadi GPyPuCC ... 3'". Schildkraut I, Lynch J, Morgan R. 15 (13): 5492. doi:10.1093 / nar / 15.13.5492. PMC  305987. PMID  3037499.
  33. ^ Xosaka T, Sakurai T, Takaxashi H, Saito H (fevral 1982). "Bifidobacterium breve dan yangi saytga xos endonukleaz Bbei". Gen. 17 (2): 117–22. doi:10.1016/0378-1119(82)90063-4. PMID  6282709.
  34. ^ Vesely Z, Shmitz GG, Jarsch M, Kessler C (iyun 1990). "BbrPI, 5'-CAC / GTG-3 ni taniydigan Bacillus brevisning yangi PmacI izosizomeri.'". Nuklein kislotalari rez. 18 (11): 3423. doi:10.1093 / nar / 18.11.3423. PMC  330975. PMID  2162525.
  35. ^ Kafri T, Hershko A, Razin A (iyun 1993). "CACGTGda CpG metilatsiyasini BbrPI cheklash fermenti bilan tekshirish". Nuklein kislotalari rez. 21 (12): 2950. doi:10.1093 / nar / 21.12.2950. PMC  309701. PMID  8332512.
  36. ^ Protozanova E, Demidov VV, Nilsen PE, Frank-Kamenetskii MD (iyul 2003). "Psevdokomplementar PNAlar dupleks DNKdagi oqsil faolligini selektiv modifikatori sifatida: II tipdagi restriktiv fermentlar holati. Nuklein kislotalari rez. 31 (14): 3929–35. doi:10.1093 / nar / gkg450. PMC  165965. PMID  12853608.
  37. ^ Aubert E, Spurgeon S, Ray V, Devies J (oktyabr 1990). "Bacillus circulans dan SphI izosizizomerini tozalash va tavsifi". Nuklein kislotalari rez. 18 (20): 6152. doi:10.1093 / nar / 18.20.6152. PMC  332440. PMID  2146591.
  38. ^ Gingeras TR, MIlazzo JP, Roberts RJ (noyabr 1978). "Restrikt fermentlarini aniqlash joylarini aniqlash uchun kompyuter yordamida usul". Nuklein kislotalari rez. 5 (11): 4105–27. doi:10.1093 / nar / 5.11.4105. PMC  342737. PMID  724510.
  39. ^ Xattman S, Keister T, Gottehrer A (oktyabr 1978). "DNK metilazalarining navbatma-navbat o'ziga xosligi Bacillus amyloliquefaciens va Bacillus brevis". J Mol Biol. 124 (4): 701–11. doi:10.1016 / 0022-2836 (78) 90178-X. PMID  712853.
  40. ^ Matvienko NI, Pachkunov D.M., Kramarov VM (1984). "BbvII saytga xos endonukleaza tanib olish ketma-ketligi Bacillus brevis 80". FEBS Lett. 177: 23–36. doi:10.1016/0014-5793(84)80973-4.
  41. ^ Repin VE, Rechkunova NI, Degtyarev SK, Xachaturyan AA, Afrikyan EK (1989). "Aerobik spora hosil qiluvchi bakteriyalar restriksiyon endonukleazalari ishlab chiqaruvchisi sifatida". Biol J Armaniston. 42: 969–72.
  42. ^ Heiter DF, Lunnen KD, Wilson GG (2005 yil may). "Geterodimerik restriksiya endonukleazasi R.BbvCI ning o'ziga xos DNK-niklangan mutantlari". J Mol Biol. 348 (3): 631–40. doi:10.1016 / j.jmb.2005.02.034. PMID  15826660.
  43. ^ Matvienko NN; Kramarov VM; Ivanov LYu; Matvienko NI (1992 yil aprel). "Bce83I, yangi 5'-CTTGAG-3 'pallindromik bo'lmagan ketma-ketlikni tan oladigan va S-adenosilmetionin bilan stimulyatsiya qilinadigan Bacillus cereus 83 ning cheklovli endonukleazasi". Nuklein kislotalari rez. 20 (7): 1803. doi:10.1093 / nar / 20.7.1803. PMC  312275. PMID  1315959.
  44. ^ Venetsianer P, Orosz A (1988 yil aprel). "BcefI, yangi turdagi IIS cheklash endonukleazasi". Nuklein kislotalari rez. 16 (7): 3053–60. doi:10.1093 / nar / 16.7.3053. PMC  336451. PMID  2835751.
  45. ^ Kong H, Roemer SE, Waite-Rees PA, Benner JS, Wilson GG, Nwankwo DO (yanvar 1994). "BcgI ning tavsifi, yangi turdagi cheklash-modifikatsiya tizimi". J Biol Chem. 269 (1): 683–90. PMID  8276869.
  46. ^ Kong H, Morgan RD, Maunus RE, Schildkraut I (fevral 1993). "Bacillus koagulanlaridan noyob cheklash endonuklezi, BcgI". Nuklein kislotalari rez. 21 (4): 987–91. doi:10.1093 / nar / 21.4.987. PMC  309233. PMID  8451198.
  47. ^ Roberts RJ, Macelis D (1997 yil yanvar). "REBASE-cheklovchi fermentlar va metilazalar". Nuklein kislotalari rez. 25 (1): 248–62. doi:10.1093 / nar / 25.1.248. PMC  146408. PMID  9016548.
  48. ^ Rowland GC, Lim PP, Glass RE (1992 yil iyul). "'Stop-kodonga xos bo'lgan 'restriksion endonukleazalar: ularni xaritalashda va genlar bilan ishlashda foydalanish ». Gen. 116 (1): 21–6. doi:10.1016 / 0378-1119 (92) 90624-X. PMID  1628840.
  49. ^ Bingem AH, Atkinson T, Sciaky D, Roberts RJ (oktyabr 1978). "Bacillus caldolyticus dan o'ziga xos endonukleaza". Nuklein kislotalari rez. 5 (10): 3457–67. doi:10.1093 / nar / 5.10.3457. PMC  342687. PMID  724493.
  50. ^ Janulaitis A, Klimasauskas S, Petrusyte M, Butkus V (1983 yil sentyabr). "BcnI metilaza bilan DNKdagi sitozin modifikatsiyasi N4-metiltsitozinni beradi". FEBS Lett. 161 (1): 131–4. doi:10.1016/0014-5793(83)80745-5. PMID  6884523.
  51. ^ Janulaitis AA, Petrusite MA, Jaskelavicene BP, Krayev AS, Skryabin KG, Bayev AA (1982 yil yanvar). "BcnI ning endonukleaza bo'yicha yangi cheklovi Bacillus centrosporus RFL 1 ". FEBS Lett. 137 (2): 178–80. doi:10.1016/0014-5793(82)80343-8. PMID  6277689.
  52. ^ Sokolowska M, Kaus-Drobek M, Czapinska H, ​​Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M (iyun 2007). "Apon shaklida va maqsadli DNKga ega assimetrik kompleksda BcnI-ning monomerik cheklanishi". J Mol Biol. 369 (3): 722–34. doi:10.1016 / j.jmb.2007.03.018. PMID  17445830.
  53. ^ Leung SM, Kam KM, Chan KY, Shaw PC (1990). "Tuproq izolatsiyasidan BcoI ning endonukleaza cheklanishini tozalash va tavsiflash Bacillus koagulani". FEMS Microbiol Lett. 66 (2): 153–6. doi:10.1111 / j.1574-6968.1990.tb03988.x. PMID  1936944.